Mass spectrometry data analysis in proteomics

"Mass spectrometry data analysis in proteomics" Table Of Contents:

• 1- Introduction to mass spectrometry-based proteomics / Rune Matthiesen and Jakob Bunkenborg
• 2- LC-MS spectra processing / Rune Matthiesen
• 3- Isotopic distributions / Alan L. Rockwood and Magnus Palmblad
• 4- Retention time prediction and protein identification / Alex A. Henneman and Magnus Palmblad
• 5- Algorithms for database-dependent search of MS/MS data / Rune Matthiesen
• 6- Interpretation of tandem mass spectra of posttranslationally modified peptides / Jakob Bunkenborg and Rune Matthiesen
• 7- Improving peptide identification using empirical scoring systems / Robert J. Chalkley
• 8- Methods and algorithms for quantitative proteomics by mass spectrometry / Rune Matthiesen and Ana Sofia Carvalho
• 9- Computational approaches to selected reaction monitoring assay design / Conrad Bessant and Jun Fan
• 10- Feature celection and machine learning with mass spectrometry data / Susmita Datta
• 11- Considerations in the analysis of hydrogen exchange mass spectrometry data / Thomas E. Wales, Michael J. Eggertson, and John R. Engen
• 12- Permethylated n-glycan analysis with mass spectrometry / Zhenxin Lin and David M. Lubman
• 13- Mass spectrometry methods for studying glycosylation in cancer / Hugo Osorio and Celso A. Reis
• 14- Proteomics data exchange and storage : the need for common standards and public repositories / Rafael C. Jimenez and Juan Antonio Vizcaıno
• 15- Tools for protein posttranslational modifications analysis : FAK, a case study / Catarina Fonseca ... [et al.]
• 16- Proteomic strategies to characterize signaling pathways / H.C. Harsha, Sneha M. Pinto, and Akhilesh Pandey
• 17- Simple proteomics data analysis in the object-oriented powershell / Yassene Mohammed and Magnus Palmblad.

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