Homology modeling - Info and Reading Options

"Homology modeling" Table Of Contents:

• 1- Classification of proteins : available structural space for molecular modeling -- Antonina Andreeva
• 2- Effective techniques for protein structure mining -- Stefan J. Suhrer ... [et al.]
• 3- Methods for sequence-structure alignment -- Ceslovas Venclovas
• 4- Force fields for homology modeling -- Andrew J. Bordner
• 5- Automated protein structure modeling with SWISS-MODEL workspace and the protein model portal -- Lorenza Bordoli and Torsten Schwede
• 6- Practical introduction to molecular dynamics simulations : applications to homology modeling -- Alessandra Nurisso, Antoine Daina, and Ross C. Walker
• 7- Methods for accurate homology modeling by global optimization -- Keehyoung Joo, Jinwoo Lee, and Jooyoung Lee
• 8- Ligand-guided receptor optimization -- Vsevolod Katritch, Manuel Rueda, and Ruben Abagyan
• 9- Loop simulations -- Maxim Totrov
• 10- Methods of protein structure comparison -- Irina Kufareva and Ruben Abagyan
• 11- Homology modeling of class A G protein-coupled receptors -- Stefano Costanzi
• 12- Homology modeling of transporter proteins (carriers and ion channels) -- Aina Westrheim Ravna and Ingebrigt Sylte
• 13- Methods for the homology modeling of antibody variable regions -- Aroop Sircar
• 14- Investigating protein variants using structural calculation techniques -- Jonas Carlsson and Bengt Persson
• 15- Macromolecular assembly structures by comparative modeling and electron microscopy -- Keren Lasker ... [et al.]
• 16- Preparation and refinement of model protein-ligand complexes -- Andrew J. W. Orry and Ruben Abagyan
• 17- Modeling peptide-protein interactions -- Nir London, Barak Raveh, and Ora Schueler-Furman
• 18- Comparison of common homology modeling algorithms : application of user-defined alignments -- Michael A. Dolan, James W. Noah, and Darrell Hurt.

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