Computational Intelligence Methods for Bioinformatics and Biostatistics - Info and Reading Options

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Title -- Preface -- Organization -- Table of Contents -- Tutorial -- Management and Analysis of Protein-to-Protein Interaction Data -- Introduction -- Generation and Management of Protein-to-Protein Interaction Data -- Experimental Methods for PPI Data Generation -- Standards for PPI Data -- Protein-to-Protein Interaction Databases -- Analysis and Comparison of Protein-to-Protein Interaction Networks -- Visualization of Large Protein-to-Protein Interaction Networks -- Ontology-Based Analysis of Protein-to-Protein Interaction Data -- Conclusion and Future Work -- References -- Plenary Talks -- The Three Steps of Clustering in the Post-Genomic Era: A Synopsis -- Introduction -- Experimental Set-Up -- Datasets -- Distances -- Algorithms and Hardware -- Evaluating Distance-Clustering Performance via ROC Analysis -- Clustering Solutions and ROC Plane -- The Distance between Clustering Solutions in ROC Plane -- A Procedure to Compare Distance Functions and Clustering Algorithms Via ROC Analysis -- Results -- Clustering Algorithms -- Internal Validation Measures -- FC and Consensus Validation Measures -- Conclusions -- De Novo Protein Subcellular Localization Prediction by N-to-1 Neural Networks -- Introduction -- Materials and Methods -- Datasets -- Predictive Architecture: N1-NN -- Evaluating Performance -- Results and Discussion -- Conclusion and Future Work -- References -- Sequence Analysis, Promoter Analysis and Identification of Transcription Factor Binding Sites -- Osmoprotectants in the Sugarcane (Saccharum spp.) Transcriptome Revealed by in Silico Evaluation -- Introduction -- Material and Methods -- Results -- Sugarcane Orthologs -- Expression Pattern Analysis of Sugarcane Orthologous -- Phylogenetic Analysis -- Discussion -- Sugarcane Osmoprotectants -- Expression Pattern -- Dendrograms/Phylogenetic Analysis -- Concluding Remarks

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