Bioinformatics - Info and Reading Options

"Bioinformatics" Table Of Contents:

• 1- Algorithms for bioinformatics (Bertil Schmidt)
• 2- Introduction to GPGPUs and massively-threaded programming (Rob Farber)
• 3- FPGA: architecture and programming (Douglas Maskell)
• 4- Parallel algorithms for alignments on the cell be (Abhinav Sarje, Srinivas Aluru)
• 5- Orchestrating the phylogenetic likelihood function on emerging parallel architectures (Alexandros Stamatakis)
• 6- Parallel bioinformatics algorithms for CUDA-enabled GPUs (Yongchao Liu, Bertil Schmidt, Douglas Maskell)
• 7- CUDA error correction method for high-throughput short-read sequencing data (Haixiang Shi, Weiguo Liu, Bertil Schmidt)
• 8- FPGA acceleration of seeded similarity search (Arpith Jacob, Joseph Lancaster, Jeremy Buhler, Roger Chamberlain)
• 9- Seed-based parallel protein sequence comparison combining multithreading, GPU and FPGA technologies (Dominique Lavenier, Van-Hoa Nguyen)
• 10- Database searching with profile hidden markov models on reconfigurable and many-core architectures (John Paul Walters, Vipin Chaudhary, Bertil Schmidt)
• 11- Cobacobana: a massively parallel FPGA-based computer architecture (Manfred Schimmler, Lars Wienbrandt, Tim Güneysu, Jost Bissel)
• 12- Accelerating string set matching for bioinformatics using FPGA hardware (Yoginder S. Dandass)
• 13- Reconfigurable neural system and its application to dimeric protein binding site identification (Feng Lin, Maria Stepanova)
• 14- Parallel FPGA search engine for protein identification (Daniel Coca, Istvan Bogdan, RoBert J. Beynong).

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