Algorithms in Bioinformatics - Info and Reading Options

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Lecture Notes in Computer Science -- Algorithms in Bioinformatics -- Copyright -- Preface -- Table of Contents -- An Improved Model for Statistical Alignment -- Improving Profile-Profile Alignments via Log Average Scoring -- False Positives in Genomic Map Assembly and Sequence Validation -- Boosting EM for Radiation Hybridand Genetic Mapping -- Placing Probes along the Genome Using Pairwise Distance Data -- Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar -- Assessing the Statistical Significance of Overrepresented Oligonucleotides -- Pattern Matching and Pattern Discovery Algorithms for Protein Topologies -- Computing Linking Numbers of a Filtration -- Side Chain-Positioning as an Integer Programming Problem -- A Chemical-Distance-Based Test for Positive Darwinian Selection -- Finding a Maximum Compatible Tree for a Bounded Number of Trees with Bounded Degree Is Solvable in Polynomial Time -- Experiments in Computing Sequences of Reversals -- Exact-IEBP: A New Technique for Estimating Evolutionary Distances between Whole Genomes -- Finding an Optimal Inversion Median:Experimental Results -- Analytic Solutions for Three-Taxon MLMC Trees with Variable Rates Across Sites -- The Performance of Phylogenetic Methods on Trees of Bounded Diameter -- (1+ε)-Approximation of Sorting by Reversals and Transpositions -- On the Practical Solution of the Reversal Median Problem -- Algorithms for Finding Gene Clusters -- Determination of Binding Amino Acids Based on Random Peptide Array Screening Data -- A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites -- Comparing Assemblies Using Fragmentsand Mate-Pairs -- Author Index

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